MaizeMine v1.4 hosts the Z. mays B73 genome assembly (Zm-B73-REFERENCE-NAM-5.0) and two gene sources, Zm00001eb.1 (from MaizeGDB/Gramene) and RefSeq (from NCBI).
Query for genes:
Search MaizeMine. Enter names, identifiers or keywords for genes, proteins, pathways, ontology terms, authors, etc. (e.g. Zm00001eb000020, 100037783, GR2b, Zm00001eb000020_T002, Zm00001eb000020_P002, NM_001111367.2, Zm00001d023210, GRMZM2G109674, 708A6_MAIZE, PZE0100000203).
Enter a list of identifiers.
MaizeMine v1.4 (Release-Updates) integrates the Zea mays Zm-B73-REFERENCE-NAM-5.0 genome assembly with many biological data sets. Homologues are provided for several other monocots and Arabidopsis thaliana. The tabs below show categories for template queries, which provide simple search menus. "Alias and DBxref" template queries are for id conversion between the Z. mays Zm00001eb.1 and RefSeq gene sets and between Zm00001eb.1 and the older MaizeGDB/Gramene gene sets (AGPv4_Zm00001d.2 and AGPv3.21_5b+).
Genes |
Gene Expression |
Protein |
Homology |
Function |
Variation |
Entire Gene Set |
Alias and DBxref |
Community |
MaizeMine v1.4 hosts the Z. mays B73 genome assembly (Zm-B73-REFERENCE-NAM-5.0) and two gene sources, Zm00001eb.1 (from MaizeGDB/Gramene) and RefSeq (from NCBI).
Query for genes:
Gene expression levels (FPKM) are from MaizeGDB qTeller. Mean expression levels for tissue samples are provided for the Zm00001eb.1 and RefSeq gene sets.
Query for gene expression:
MaizeMine includes information about proteins and protein domains from UniProt and InterProt.
Query for protein:
MaizeMine includes homologue predictions from EnsemblCompara for Zea mays, other monocots and Arabidopsis.
Query for homology:
MaizeMine v1.4 includes GO annotation and pathway information from KEGG and Plant Reactome for Z. mays.
Query for function:
MaizeMine v1.4 provides SNP information from Ensembl Plants. SNP identifiers are from Panzea.
Query for variation:
The query templates in this category allow you to perform simple queries on an entire gene or protein set for a species.
Query for entire gene set:
The query templates in this category allow you to retrieve gene database crossreference ids (Zm00001eb.1 <=> RefSeq) and gene alias ids (Zm00001eb.1 <=> AGPv4_Zm00001d.2 and Zm00001eb.1 <=> AGPv3.21_5b+).
Query for alias and dbxref:
Community datasets include published data that were mapped to the Zm-B73-REFERENCE-NAM-5.0 assembly at MaizeGDB. See the Data Source page for a list of datasets.
Query for community:
Please contact us if you would like any additional template queries or if you have a concern about a query not completing.
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