The gene models and other genome annotation in MaizeMine are provided by MaizeGDB, Gramene, and RefSeq. Read more
Query for genes:
Search MaizeMine. Enter names, identifiers or keywords for genes, proteins, pathways, ontology terms, authors, etc. (e.g. Zm00001d023210, GRMZM2G109674, Zm00001d023208_T002, GR2b, 100037783, NM_001111367.2).
Enter a list of identifiers.
MaizeMine 1.3 (release updates) integrates the Zea mays B73 genome assemblies (v3 and v4) with many biological data sets. Homologues are provided for several other monocots and Arabidopsis thaliana. The tabs below show categories for template queries, which provide simple search menus. "Alias and DBxref" template queries are for id conversion between the Z. mays AGPv3.21, AGPv4 and RefSeq gene sets.
Genes |
Gene Expression |
Protein |
Homology |
Function |
Variation |
Entire Gene Set |
Alias and DBxref |
The gene models and other genome annotation in MaizeMine are provided by MaizeGDB, Gramene, and RefSeq. Read more
Query for genes:
Gene Expression levels (FPKM and Normalized Counts) were computed using Cuffquant and Cuffnorm after aligning RNAseq reads from the Michigan State University Gene Expression Atlas data set (NCBI BioProject PRJNA171684) to the Zea mays B73 v3 and v4 assemblies. Mean expression levels for tissue sample replicates and are provided for the AGPv3.21, AGPv4 and RefSeq datasets Read more
Query for gene expression:
MaizeMine includes information about proteins and protein domains from UniProt and InterProt. Read more
Query for protein:
MaizeMine includes homologue predictions from EnsemblCompara for other monocots and Arabidopsis Read more
Query for homology:
MaizeMine includes GO annotation for Z. mays and pathway information from KEGG (Z. mays, O. sativa, S. bicolor, and S. italica), CornCyc (Z. mays) and Plant Reactome (Z. mays and A. thaliana). Read more
Query for function:
MaizeMine provides SNP information for the B73_RefGen_v4 assembly. Read more
Query for variation:
The query templates in this category allow you to perform simple queries on an entire gene or protein set for a species. Read more
Query for entire gene set:
The query templates in this category allow you to convert identifiers. Use a database cross reference query template for these gene identifier conversions: AGPv3.21 <=> AGPv4 and AGPv4 <=> RefSeq. Read more
Query for alias and dbxref:
Please contact us if you would like any additional template queries or if you have a concern about a query not completing.
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